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Research in the Gilbert Lab

  Rare-species advantage: consequences of phylogenetic and numerical rarity of hosts for disease pressure and pathogen communities

Greg Gilbert, Ingrid Parker, and Megan Saunders.
Locally rare species are expected to have a survival advantage over more abundant species, because rarity reduces their risk of damage from pathogens. This "rare-species advantage" may help maintain plant diversity in natural systems and explain how introduced plant species become invasive weeds. Usually, a plant species is considered rare if few individuals of that species are present; this assumes that pathogens are specialized on individual species. In fact, most pathogens are able to infect a variety of different hosts. Which hosts are susceptible is not a random assortment of species, because closely related species are more likely to share a pathogen than are more distantly related species. This means that rarity is not simply a function of species density (numerical rarity), but of the combined density of all species with which it shares a pathogen. A species with no closely related neighbors has the added benefit of "phylogenetic rarity". We are evaluating the relative importance of phylogeny and abundance in the rare-species advantage of plants in seven plant communities along the Central Coast of California. We will measure disease on different plant species, the host ranges of the responsible pathogens, and the ability of the pathogens to reproduce on different hosts. These results will be compared to the local host abundance and the relatedness between host species, in the first attempt to evaluate how the overall structure of a plant community affects the amount of disease suffered by each species in the community. (NSF DEB-084259)    related pubs...

FERP

  UCSC - Forest Ecology Research Plot

Greg Gilbert and lots of other people.
The UCSC-FERP is a 6-ha mapped forest plot in Mediterranean-climate, mixed-evergreen coastal forest in the Santa Cruz mountains, along the Central Coast of California, USA.  Located in the Campus Natural Reserve on the University of California Santa Cruz Campus, it is both part of an extensive area of protected forest habitat and just a short walk or drive from the UCSC laboratories and classrooms.  It is meant to foster research and inquiry-based teaching about ecology and evolutionary biology in a changing world.  In 2007, the Gilbert lab (with support from NSF DEB-0515520) tagged, mapped, measured, and identified all the trees, shrubs, and vines on the plot that had a stem diameter larger than 1 cm.  We followed the standardized protocol established by CTFS to allow direct comparison to the established network of mapped plots.  Among the 8,180 woody individuals the 6 ha (~15 acres) UCSC-FERP, we found 31 woody species from 27 genera and 18 families. To facilitate research on the plot, we maintain grid-based biological and environmental monitoring programs that include litter-fall traps, micrometeorological stations, soil moisture, canopy openness, soil nutrients, and bird, small-mammal, and mushroom survey.  We welcome collaborating researchers from UCSC and elsewhere to use the plot for non-destructive research that complements ongoing efforts. See the UCSC FERP link for more information. (NSF DEB-0515520, DEB-084259, UCSC)    related pubs...

  Phyloepidemiology: Phylogenetic ecology of plant diseases

Greg Gilbert, Cam Webb, and Karen Garrett.
Some plant pathogens cause destructive epidemics in natural plant communities, but many others have limited impacts, or can even act as important agents in maintaining structure and diversity in species-rich plant communities. Predicting the spread and impacts of a particular plant pathogen depends on understanding the range of plant species it can infect as well as the spatial arrangement and abundance of host species in the landscape. Here we will work in both the moist tropical forest of lowland Panama and the mixed temperate forest on the central coast of California to examine how the composition and spatial patterns of plant species in the forest affects the potential for disease spread in high- and low-diversity plant communities. Through a series of cross inoculations we will measure directly the potential for pathogens to be shared among hosts that are evolutionarily closely or more distantly related. Using a spatially-explicit epidemiological simulation model, we will couple these empirical estimates of host range with the known spatial pattern of tree species in mapped plots in the forests, to examine the likelihood of spread through forest communities of pathogens with different life histories and different host breadths. The results of this research will inform issues of forest management, plant pest quarantine, and a basic understanding of the importance of host range in plant-pathogen interactions in natural communities. (NSF DEB-0515520)   related pubs...

Megan Saunders   Biotic Invasions and novel plant-pathogen interactions

Ingrid Parker and Greg Gilbert
In a long-term collaboration with Dr. Ingrid M. Parker (Dept. of Ecology and Evolutionary Biology, UCSC) and others, we are examining the role of pathogens and herbivores in regulating whether introduced plants become invasive weeds. We are evaluating two hypotheses central to invasion biology: The Escape from Natural Enemies Hypothesis (where plants become weeds when introduced to a new locale by escaping the natural enemies that kept their populations in check in their native range), and the Biotic Resistance Hypothesis (where introduced plants are unable to invade natural communities because they are particularly susceptible to the newly encountered pathogens and pests to which they are naïve). Additionally, we use greenhouse and laboratory experiments to evaluate how rapidly novel host-pathogen interactions change in virulence. Experimental work has been based primarily at the Bodega Marine Reserve and Laboratory, focused on a suite of 18 native and introduced clover species (Trifolium and Medicago) in the California coastal prairie. (NSF DEB-9806517, DEB-0096298)   related pubs...

  Emerging plant diseases: Porroca of Coconut

Greg Gilbert, Ingrid Parker, Edgardo Soo, Nigel Harrison, and John Rogers
This long-term project focuses on the large-scale epidemiology of an emergent disease of coconut, "Porroca" or Little Leaf, that has spread rapidly across Panama, with potentially devastating impacts on the economy of the Kuna Indians, the principal indigenous community of the Caribbean coast of the isthmus. Since 1998 we have conducted regular surveys of more than 200,000 coconut palms in Panama and the Comarca of Kuna Yala. Ultimately, this project is aimed at helping to solve a potentially devastating socioeconomic problem for the Kuna community, with ongoing community-based experiments for control of the disease. Additionally, the project will contribute toward models for the spread of invasive new diseases across the landscape. Collaborative work with Nigel Harrison points to a Stolbur-group phytoplasma as the cause of the disease, and we are working to elucidate the basic biology of the disease and seek control options. This research is a collaboration with Kuna project coordinator Edgardo Soo, and the Kuna General Congress. This project also produced the first complete map of the more than 300 islands in the comarca of Kuna Yala. (Jane Carver Foundation) related pubs...

  Diversity and structure of fungal communities

Greg Gilbert, Don Reynolds, Astrid Ferrer, and many more
I have a long-term interest in trying to understand what controls the diversity, composition, and structure of fungal (and bacterial) communities. I've taken a variety of approaches to teasing out the relative contributions of abiotic factors, host preferences, and dispersal limitation in shaping fungal communities. Most of the work has been with wood-decay polypore fungi, epifoliar fungi, foliar endophytes, and rhizosphere bacteria. Most of this work has been in moist tropical forests and mangrove forests, with studies in Panama, Costa Rica, Australia, and Micronesia. I've been particularly interested in how fungal communities vary vertically in the forests, and so a number of studies have employed canopy access cranes. This work is being extended to comparative work in California forests. (STRI, Mellon Foundation)    related pubs...

  Disease and the maintenance of plant diversity

Greg Gilbert, Bárbara Ayala, Kyle Harms, Devon Bradley, Jen Martiny.
Perhaps the most fundamental question in tropical ecology is "what maintains high biological diversity?" I have a long-standing interest in how plant diseases affect host population dynamics, community structure, and conservation of forest ecosystems. Much of my work has focused on investigating the impacts of endemic diseases on host fecundity, survival, and spatial distribution. Past work has included tests of the Janzen-Connell hypothesis, where diseases of juvenile trees disproportionately affect trees at high densities and near mother trees. This makes resources available for non-susceptible species and can help maintain high diversity in the forest. I continue to look at the role diseases play in structuring both high- and low-diversity tropical forests, ranging from lowland moist tropical forests to mangrove forests.  (STRI) related pubs...

Los Tuxtlas   Tropical conservation and agroecology

Greg Gilbert, Ernesto Méndez, CenTREAD Working Group
Much of my tropical work is intended to inform better conservation practices, particuarly in a landscape of mixed land-use types. The CenTREAD Working Group on the UCSC campus regularly publishes reviews or other collaborative papers in the area of tropical ecology, agriculture, and development. (Jane Carver Foundation, Pepper-Giberson Chair)    related pubs...

 

 

 

 

 

 

Rare-species advantage

 

This is a new project; no publications yet

   

UCSC-Forest Ecology Research Plot

2010 Gilbert, G.S., E. Howard, B. Ayala-Orozco, M. Bonilla-Moheno, J. Cummings, S. Langridge, I.M. Parker, J. Pasari, D. Schweizer, S. Swope. Beyond the tropics: forest structure in a temperate forest mapped plot. Journal of Vegetation Science 21:388-405. PDF appendices

Phyloepidemiology

2007

Gilbert, G.S. and C.O. Webb. Phylogenetic signal in plant pathogen-host range. Proceedings of the National Academy of Sciences (PNAS) 104:4979-4983 PDF

2007

Gilbert, G.S., D.R. Reynolds and A. Bethancourt. The patchiness of epifoliar fungi in tropical forests: host range, host abundance, and environment. Ecology 88:575-581 PDF

2006

Webb, C.O., G.S. Gilbert, and M. J. Donoghue.  Phylodiversity dependent seedling mortality, size structure, and disease in a Bornean rain forest.  Ecology 87(7): S123-S131 PDF

Evolutionary ecology of novel plant-pathogen interactions

2010 Gilbert, G.S. and I.M. Parker. Rapid evolution in a plant-pathogen interaction and the consequences for introduced host species. Evolutionary Applications. in press

2007

Parker, I.M. and G.S. Gilbert. When there is no escape: the effects of natural enemies on native, invasive, and noninvasive plants.  Ecology 88: 1210-1224 PDF

2007

Morris, W.F., R.A. Hufbauer, A.A. Agrawal, J.D. Bever, V.A. Borowicz, G.S. Gilbert, J.L. Maron, C.E. Mitchell, I.M. Parker, A.G. Power, M.E. Torchin, D.P. Vázquez.  Direct and interactive effects of enemies and mutualists on plant performance: a meta-analysis. Ecology 88:1021-1029 PDF

2006

Mitchell, C., Agrawal, A., Bever, J., Gilbert, G., Hufbauer, R., Klironomos, J., Maron, J., Morris, W., Parker, I., Power, A., Seabloom, E., Torchin, M., Vázquez, D.  Biotic interactions and plant invasions. Ecology Letters 9:726-740 PDF

2006

Gilbert, G. S. and I. M. Parker. Invasions and the regulation of plant populations by pathogens. Pages 289-305 in: M.W. Cadotte, S. M. McMahon, and T. Fukami (Eds.) Conceptual ecology and invasion biology: reciprocal approaches to nature. Springer.

2004

Parker, I.M. and G.S. Gilbert.  The evolutionary ecology of novel plant-pathogen interactions.  Annual Review of Ecology, Evolution, and Systematics.  35: 675-700 PDF

2003

Bradley, D. J., G. S. Gilbert, and I. M. Parker.  Susceptibility of clover species to fungal infection: the interaction of leaf surface traits and environment.  American Journal of Botany 90:857-864 PDF

2000

Goodell, K., I.M. Parker, and G.S. Gilbert.  Biological impacts of species invasions: Implications for policy makers.  Pages 87-117 in Caswell, J. (ed.), Incorporating Biological, Natural, and Social Sciences in Sanitary and Phytosanitary Standards in International Trade.  Washington DC: Nation Academy Press.

Emergent plant diseases: Porroca of Coconut

2008 Gilbert, G.S. and I.M. Parker. Porroca: an emerging disease of coconut in Central America.  Plant Disease 92:826-830 PDF    version en Español
2002 Proyecto Porroca.  Mapa de la Comarca de Kuna Yala (Map of the Indigenous Reserve of Kuna Yala).  First complete, published map of the islands and towns of the Kuna people, in Kuna Yala, Panama.  Produced by Proyecto Porroca (G.S. Gilbert, I.M. Parker, and E. Soo). PDF
1999 Gilbert, G.S., E. Soo, and I.M. Parker.  La Porroca.  Una nueva enfermedad del cocotero en Kuna Yala y Panama (Technical bulletin in Spanish and Kuna on an emerging disease of coconut in Panama) (technical brochure).

Diversity and structure of fungal communities

2009 Bergemann, S.E., M.A. Smith, J.L. Parrent, G.S. Gilbert, and M. Garbelotto. Genetic population structure and distribution of a fungal polypore, Datronia caperata (Polyporaceae), in mangrove forests of Central America. Journal of Biogeography. 36: 266-279 PDF
2008 Gilbert, G.S., J. Gorospe, and L. Ryvarden. Host and habitat preferences of polypore fungi in Micronesian tropical flooded forests. Mycological Research 112:674-680. PDF

2007

Gilbert, G.S., D.R. Reynolds and A. Bethancourt. The patchiness of epifoliar fungi in tropical forests: host range, host abundance, and environment. Ecology 88:575-581 PDF   (appendices) PDF

2006

Reynolds, D.R. and G.S. Gilbert.  Epifoliar fungi from Panama.  Cryptogamie Mycologie 27:249-270.

2005

Gilbert, G.S. and D.R. Reynolds. Nocturnal fungi: Airborne spores in the canopy and understory of a tropical rain forest.  Biotropica 37(3): 461-463 PDF

2005

Reynolds, D. R. and G. S. Gilbert. Epifoliar fungi from Queensland, Australia. Australian Systematic Botany. 18: 265-289. PDF   (appendix) PDF

2004

Parrent, J.L., M. Garbelotto, and G. S. Gilbert.  Population genetic structure of the polypore fungus Datronia caperata in fragmented mangrove forests.  Mycological Research 108:403-410 PDF

2003

Ferrer, A. and G. S. Gilbert. Effect of tree host species on fungal community composition in a tropical rain forest in Panama. Diversity and Distributions 9:455-468 PDF

2002

Gilbert, G.S. Interacciones entre microorganismos y plantas (Interactions between microorganisms and plants)  Pages 435-463 in M. Guariguata and G. Kattan (eds.), Ecología y Conservación de Bosques Tropicales (Ecology and Conservation of Tropical Forests, in Spanish). Libro Universitario Regional, Cartago, Costa Rica.

2002

Gilbert, G.S. and W.P. Sousa. Host specialization among wood-decay fungi in Caribbean mangrove forests Biotropica 34:396-404. PDF

2002

Gilbert, G.S., M. Mejía-Chang, and E. Rojas.  Fungal diversity and plant disease in mangrove forests: salt excretion as a possible defense mechanism. Oecologia 132:278-285. PDF

2002

Gilbert, G.S., A. Ferrer, and J. Carranza.  Polypore fungal diversity and host density in a moist tropical forest. Biodiversity and Conservation 11: 947-957. PDF

1997

Gilbert, G.S., N. Talaro, C. A. Howell, and A. Symstad.  Multiple-scale spatial distribution of the fungal epiphyll Scolecopeltidium on Trichilia spp. in two lowland moist tropical forests. Canadian Journal of Botany 75: 2158-2164. PDF

1996

Gilbert, G.S., J.L. Parke, J. Handelsman, and M.K. Clayton.  Use of cluster and discriminant analyses to compare rhizosphere bacterial communities following biological perturbation. Microbial Ecology 32:123-147. PDF

1994

Gilbert, G.S., J. Handelsman, and J.L. Parke.  Root camouflage and disease control.  Phytopathology 84:222-225. PDF

1993

Gilbert, G.S., J.L. Parke, M.K. Clayton, and J. Handelsman.  Effects of an introduced bacterium on bacterial communities on roots.  Ecology 74:840-854 PDF

Maintenance of plant diversity

2008 Bradley, D.J., G.S. Gilbert, and J.B.H. Martiny.  Pathogens promote plant diversity through a compensatory response.  Ecology Letters 11:461-469 PDF

2006

Webb, C.O., G.S. Gilbert, and M. J. Donoghue.  Phylodiversity dependent seedling mortality, size structure, and disease in a Bornean rain forest.  Ecology 87(7): S123-S131 PDF

2005

Gilbert, G. S. The dimensions of plant disease in tropical forests. Pp. 141-164.  in D.R.F.P. Burslem, M.A. Pinard and S. Hartley (eds.) Biotic Interactions in the Tropics. Cambridge University Press.

2002

Gilbert, G.S. Evolutionary ecology of plant diseases in natural ecosystems.  Annual Review of Phytopathology 40:13-43 PDF

2001

Gilbert, G.S.,  K. E. Harms, D. N. Hamill,  S. P. Hubbell, and R. B. Foster. Effects of seedling size, weather, seedling density, and distance to nearest conspecific adult on 6-year survival of Ocotea whitei seedlings in Panamá. Oecologia 127: 509-516. PDF

1998

Travers, S.E., G.S. Gilbert, and E.F. Perry.  The effect of rust infection on reproduction in a tropical tree (Faramea occidentalis). Biotropica 30:438-443. PDF

1996

Gilbert, G.S. and D. De Steven.  A canker disease of seedlings and saplings of Tetragastris panamensis (Burseraceae) caused by Botryosphaeria dothidea in a lowland tropical forest.  Plant Disease 80: 684-687. PDF

1995

Gilbert, G.S.  Rain forest plant diseases: the canopy - understory connection.  Selbyana 16:75-77 PDF.

1994

Gilbert, G.S., S.P. Hubbell, and R.B. Foster.  Density and distance-to-adult effects of a canker disease of trees in a moist tropical forest.  Oecologia 98: 100-108 PDF.

Tropical conservation and agroecology

2009 Méndez, V. E., E. N. Shapiro, and G.S. Gilbert.  Cooperative management and its effects on shade tree diversity, soil properties and ecosystem services of coffee plantations in western El Salvador.  Agroforestry Systems 76:111-126 PDF

2007

Mendez, V., E., S.R. Gliessman, and G.S.Gilbert, Tree biodiversity of a shade coffee landscape in western El Salvador. Agriculture, Ecosystems and Environment 119:145-159  PDF

2005

CenTREAD Working Group. Farmers and the forest: Can agroforestry actually conserve biodiversity?  Review of Agroforestry and Biodiversity Conservation in Tropical Landscapes. Schroth, G., G. A. B. da Fonseca, C. A. Harvey, C. Gascon, H. L. Vasconcelos, and A-M. N. Izac, (eds.). 2004 Island Press.  Conservation Biology 19: 2043-2044 PDF

2005

CenTREAD Working Group.  Making Parks Work: a thought provoking argument but not a guide. Review of  Making Parks Work: Strategies for Preserving Tropical Nature (2002) by Terborgh, J., C. Van Schaik, L. Davenport, and M. Rao, (Eds.)  Conservation Biology 19:279-281 PDF

1996

Gilbert, G.S. and S.P. Hubbell.  Plant diseases and the conservation of tropical forests.  Bioscience 46: 98-106 PDF